Reconstruction of the Brassica rapa Ancestral Genome

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Reconstruction of the Brassica rapa ancestral genome.

The Brassicaceae family includes important crop plants as well as the model plant Arabidopsis thaliana. The evolutionary history of this family is characterized by a number of whole genome duplications (WGDs), and the relationships within the family have been a matter of study and debate for decades. Recent multi-gene phylogenetic analyses have revealed that the Brassicaceae family can be divid...

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Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

The genus Brassica includes several important agricultural and horticultural crops. Their current genome structures were shaped by whole-genome triplication followed by extensive diploidization. The availability of several crucifer genome sequences, especially that of Chinese cabbage (Brassica rapa), enables study of the evolution of the mesohexaploid Brassica genomes from their diploid progeni...

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Unleashing the Genome of Brassica Rapa

The completion and release of the Brassica rapa genome is of great benefit to researchers of the Brassicas, Arabidopsis, and genome evolution. While its lineage is closely related to the model organism Arabidopsis thaliana, the Brassicas experienced a whole genome triplication subsequent to their divergence. This event contemporaneously created three copies of its ancestral genome, which had di...

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Progress in Understanding and Sequencing the Genome of Brassica rapa

Brassica rapa, which is closely related to Arabidopsis thaliana, is an important crop and a model plant for studying genome evolution via polyploidization. We report the current understanding of the genome structure of B. rapa and efforts for the whole-genome sequencing of the species. The tribe Brassicaceae, which comprises ca. 240 species, descended from a common hexaploid ancestor with a bas...

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Ancestral Genome Reconstruction on Whole Genome Level

Comparative genomics, evolutionary biology, and cancer researches require tools to elucidate the evolutionary trajectories and reconstruct the ancestral genomes. Various methods have been developed to infer the genome content and gene ordering of ancestral genomes by using such genomic structural variants. There are mainly two kinds of computational approaches in the ancestral genome reconstruc...

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ژورنال

عنوان ژورنال: The Plant Cell

سال: 2013

ISSN: 1040-4651,1532-298X

DOI: 10.1105/tpc.113.250511